IchDB | Ichthyophthirius Genome Database Wiki

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Recent Papers

Abdelrazek SMR, Connon RE, Sanchez C, Atencio B, Mauduit F, Lehman B, Hallett SL, Atkinson SD, Foott JS, Daniels ME (2023) Responses to pathogen exposure in sentinel juvenile fall-run Chinook salmon in the Sacramento River, CA. Conservation physiology 11:coad066
PUBMED:37649642

Chen F, Zhang W, Xu X, Gui L, Lin Y, Wu M, Li J, Shen Y (2023) Identification of Genes Related to Resistance to Ichthyophthirius multifiliis Based on Co-expression Network Analysis in Grass Carp. Marine biotechnology (New York, N.Y.) :
PUBMED:37610535

Yang H, Wang Z, Xiao J, Hu J, Tu X, Gu Z (2023) Integrated morphological and transcriptome profiles reveal a highly-developed extrusome system associated to virulence in the notorious fish parasite, . Virulence 14:2242622
PUBMED:37551042

BLAST Server at IchDB

Click here for information about the BLAST process and help with advanced options.

BLAST Program

blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database

Database

I. Multifiliis Amino Acid (protein)
I. Multifiliis CDS (nucleotide)
I. Multifiliis Assembly (nucleotide)

Query Sequence Enter sequence below in FASTA format

Or load it from disk:
Set subsequence from to

Advanced Options

Filter for low copmlexity regions

Perform ungapped alignment

Expect
Matrix
Alignments

Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)

Other advanced options:

Wiki Links

External Links

Ciliate Genomics Consortium
Ichthyophthirius Wikipedia Page

Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The Ciliate.org project at Bradley University is supported by a grant from the National Center for Research Resources, part of the US National Institutes of Health.